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from_disks: fix some of the pattern checking logic

Pierre-Yves David requested to merge generated-differential-D8571-source into generated-differential-D8571-target

The patterns were validated from $PWD and later applied on path relative to root_path. So we shuffle a bit the code to test them against root_path. We make the absolute pattern relative in the same go.

This code is coming from swh-scanner and should probably get an overhaul, however for now we start by making it not broken.

Migrated from D8571 (view on Phabricator)

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