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directory: Fix a couple of edge case issues in checkout_repository_ref

Antoine Lambert requested to merge anlambert/swh-loader-git:checkout-repository-ref-fixes into master

Ensure to remove trailing slash in git URL when computing its basename as an empty string is returned otherwise.

When a shallow fetch failed, typically when the ref is a commit short hash, retry a full fetch in order for ref checkout to succeed.

Related to #4751.

Fixes SWH-LOADER-GIT-1YA and SWH-LOADER-GIT-1YB.

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