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opam: Fix 'opam init' error when relisting an opam instance

Antoine Lambert requested to merge anlambert/swh-lister:opam-fix-instance-relisting into master

When relisting an opam instance and the opam root directory is already populated, the '--set-default' parameter must be provided otherwise the following error is reported:

No switch is currently set. Please use 'opam switch' to set or install a switch

Related to swh/infra/sysadm-environment#4971 (closed).

Also only capture stdout when calling opam list to ease debugging.

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