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docker: Cleanup docker-compose.yml file

Antoine Lambert requested to merge generated-differential-D5089-source into generated-differential-D5089-target

Harmonize YAML formatting and remove some unused services:

  • flower as it has always been deactivated

  • kafka-manager as it is not mandatory to run the swh stack.

Migrated from D5089 (view on Phabricator)

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