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docker: Remove shell based tests and add extra checks to git loader test

Antoine Lambert requested to merge generated-differential-D8222-source into generated-differential-D8222-target

Shell based tests for the docker environment are now redundant with pytest-testinfra based ones so it is time to remove them.

I took care to implement in Python the extra shell checks testing if all git objects have been loaded into the archive, so we do not lose some coverage.

I also replaced the use of the git command by the dulwich module in test implementation.

See commit log for more details.

Migrated from D8222 (view on Phabricator)

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