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Makefile.sphinx: Fix some apidoc excludes values

Antoine Lambert requested to merge generated-differential-D5797-source into generated-differential-D5797-target

Previous values did not prevent sphinx-apidoc to walk the content of these directories (see apidoc code) resulting in really long processing when directories contain a lof of entries (node_modules for instance).

That change enables to significantly speedup swh-web documentation build.

Migrated from D5797 (view on Phabricator)

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