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Fix removing objects with stale entries in `object_references`

Jérémy Bobbio (Lunar) requested to merge lunar/swh-alter:fix-stale-object-references into main

We don’t clean up the object_references table when we remove an object. When successively removing forks, recently added common objects would not be removed due to these stale entries.

To fix this, we have to replicate the same filtering logic we were doing to account for an outdated swh-graph.

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