The empty folder was not previously in the objects structure.
So we need to add it as child of its parent for the update.

Enforce convention on directory name without trailing /.
At the moment, the `git.walk_and_compute_sha1_from_directory` injected
the rootdir with a possible trailing / (input from client).

Decrease the number of paths to compute to 1 common ancestor (if any):
- Scan only that directory and rehash with new results (data changed)
- Update the resulting objects with those new hashes.
- Update from that directory to the rootdir the existing hashes computation

level for example)