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Fix bogus directory entry permissions in database

swh/devel/swh-model#685 (closed) had us generate a flurry of directory entries with bogus permissions. We need to fix them.

Probably something along the lines of :

update directory_entry_file set perms = 33188 where perms = 100644;
update directory_entry_file set perms = 33261 where perms = 100755;
update directory_entry_file set perms = 40960 where perms = 120000;
update directory_entry_dir set perms = 16384 where perms = 40000;

Migrated from T686 (view on Phabricator)