diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..68708728197a5774d0b68cdd676cd092103aa1fe --- /dev/null +++ b/.gitignore @@ -0,0 +1,15 @@ +*~ +build +/.coverage +/.coverage.* +dist +*.egg-info/ +.eggs/ +.hypothesis +*.pyc +__pycache__ +.pytest_cache +*.sw? +.tox +version.txt +.mypy_cache/ diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..69b33490b621ead79cc10580132da2804d49f842 --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,40 @@ +repos: +- repo: https://github.com/pre-commit/pre-commit-hooks + rev: v2.4.0 + hooks: + - id: trailing-whitespace + - id: flake8 + - id: check-json + - id: check-yaml + +- repo: https://github.com/codespell-project/codespell + rev: v1.16.0 + hooks: + - id: codespell + +- repo: local + hooks: + - id: mypy + name: mypy + entry: mypy + args: [swh] + pass_filenames: false + language: system + types: [python] + +- repo: https://github.com/python/black + rev: 19.10b0 + hooks: + - id: black + +# unfortunately, we are far from being able to enable this... +# - repo: https://github.com/PyCQA/pydocstyle.git +# rev: 4.0.0 +# hooks: +# - id: pydocstyle +# name: pydocstyle +# description: pydocstyle is a static analysis tool for checking compliance with Python docstring conventions. +# entry: pydocstyle --convention=google +# language: python +# types: [python] + diff --git a/AUTHORS b/AUTHORS new file mode 100644 index 0000000000000000000000000000000000000000..2d0a34af6f52cf3cf6b0c2f7bd0648fbd255e77f --- /dev/null +++ b/AUTHORS @@ -0,0 +1,3 @@ +Copyright (C) 2015 The Software Heritage developers + +See http://www.softwareheritage.org/ for more information. diff --git a/CODE_OF_CONDUCT.md b/CODE_OF_CONDUCT.md new file mode 100644 index 0000000000000000000000000000000000000000..0ad22b51e38e1a3dc2792766db295fca2892142f --- /dev/null +++ b/CODE_OF_CONDUCT.md @@ -0,0 +1,78 @@ +# Software Heritage Code of Conduct + +## Our Pledge + +In the interest of fostering an open and welcoming environment, we as Software +Heritage contributors and maintainers pledge to making participation in our +project and our community a harassment-free experience for everyone, regardless +of age, body size, disability, ethnicity, sex characteristics, gender identity +and expression, level of experience, education, socio-economic status, +nationality, personal appearance, race, religion, or sexual identity and +orientation. + +## Our Standards + +Examples of behavior that contributes to creating a positive environment +include: + +* Using welcoming and inclusive language +* Being respectful of differing viewpoints and experiences +* Gracefully accepting constructive criticism +* Focusing on what is best for the community +* Showing empathy towards other community members + +Examples of unacceptable behavior by participants include: + +* The use of sexualized language or imagery and unwelcome sexual attention or + advances +* Trolling, insulting/derogatory comments, and personal or political attacks +* Public or private harassment +* Publishing others' private information, such as a physical or electronic + address, without explicit permission +* Other conduct which could reasonably be considered inappropriate in a + professional setting + +## Our Responsibilities + +Project maintainers are responsible for clarifying the standards of acceptable +behavior and are expected to take appropriate and fair corrective action in +response to any instances of unacceptable behavior. + +Project maintainers have the right and responsibility to remove, edit, or +reject comments, commits, code, wiki edits, issues, and other contributions +that are not aligned to this Code of Conduct, or to ban temporarily or +permanently any contributor for other behaviors that they deem inappropriate, +threatening, offensive, or harmful. + +## Scope + +This Code of Conduct applies within all project spaces, and it also applies when +an individual is representing the project or its community in public spaces. +Examples of representing a project or community include using an official +project e-mail address, posting via an official social media account, or acting +as an appointed representative at an online or offline event. Representation of +a project may be further defined and clarified by project maintainers. + +## Enforcement + +Instances of abusive, harassing, or otherwise unacceptable behavior may be +reported by contacting the project team at `conduct@softwareheritage.org`. All +complaints will be reviewed and investigated and will result in a response that +is deemed necessary and appropriate to the circumstances. The project team is +obligated to maintain confidentiality with regard to the reporter of an +incident. Further details of specific enforcement policies may be posted +separately. + +Project maintainers who do not follow or enforce the Code of Conduct in good +faith may face temporary or permanent repercussions as determined by other +members of the project's leadership. + +## Attribution + +This Code of Conduct is adapted from the [Contributor Covenant][homepage], version 1.4, +available at https://www.contributor-covenant.org/version/1/4/code-of-conduct.html + +[homepage]: https://www.contributor-covenant.org + +For answers to common questions about this code of conduct, see +https://www.contributor-covenant.org/faq diff --git a/CONTRIBUTORS b/CONTRIBUTORS new file mode 100644 index 0000000000000000000000000000000000000000..168824fec62634e027fb71c378657b25e84ffeaf --- /dev/null +++ b/CONTRIBUTORS @@ -0,0 +1,2 @@ +Daniele Serafini +Ishan Bhanuka diff --git a/LICENSE b/LICENSE new file mode 100644 index 0000000000000000000000000000000000000000..94a9ed024d3859793618152ea559a168bbcbb5e2 --- /dev/null +++ b/LICENSE @@ -0,0 +1,674 @@ + GNU GENERAL PUBLIC LICENSE + Version 3, 29 June 2007 + + Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/> + Everyone is permitted to copy and distribute verbatim copies + of this license document, but changing it is not allowed. + + Preamble + + The GNU General Public License is a free, copyleft license for +software and other kinds of works. + + The licenses for most software and other practical works are designed +to take away your freedom to share and change the works. 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Disclaimer of Warranty. + + THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY +APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT +HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY +OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, +THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR +PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM +IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF +ALL NECESSARY SERVICING, REPAIR OR CORRECTION. + + 16. Limitation of Liability. + + IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING +WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS +THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY +GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE +USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF +DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD +PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), +EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF +SUCH DAMAGES. + + 17. Interpretation of Sections 15 and 16. + + If the disclaimer of warranty and limitation of liability provided +above cannot be given local legal effect according to their terms, +reviewing courts shall apply local law that most closely approximates +an absolute waiver of all civil liability in connection with the +Program, unless a warranty or assumption of liability accompanies a +copy of the Program in return for a fee. + + END OF TERMS AND CONDITIONS + + How to Apply These Terms to Your New Programs + + If you develop a new program, and you want it to be of the greatest +possible use to the public, the best way to achieve this is to make it +free software which everyone can redistribute and change under these terms. + + To do so, attach the following notices to the program. It is safest +to attach them to the start of each source file to most effectively +state the exclusion of warranty; and each file should have at least +the "copyright" line and a pointer to where the full notice is found. + + <one line to give the program's name and a brief idea of what it does.> + Copyright (C) <year> <name of author> + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. + +Also add information on how to contact you by electronic and paper mail. + + If the program does terminal interaction, make it output a short +notice like this when it starts in an interactive mode: + + <program> Copyright (C) <year> <name of author> + This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'. + This is free software, and you are welcome to redistribute it + under certain conditions; type `show c' for details. + +The hypothetical commands `show w' and `show c' should show the appropriate +parts of the General Public License. Of course, your program's commands +might be different; for a GUI interface, you would use an "about box". + + You should also get your employer (if you work as a programmer) or school, +if any, to sign a "copyright disclaimer" for the program, if necessary. +For more information on this, and how to apply and follow the GNU GPL, see +<http://www.gnu.org/licenses/>. + + The GNU General Public License does not permit incorporating your program +into proprietary programs. If your program is a subroutine library, you +may consider it more useful to permit linking proprietary applications with +the library. If this is what you want to do, use the GNU Lesser General +Public License instead of this License. But first, please read +<http://www.gnu.org/philosophy/why-not-lgpl.html>. diff --git a/Makefile.local b/Makefile.local new file mode 100644 index 0000000000000000000000000000000000000000..249d0efee7b69d948e153e3abefaedae6fb290de --- /dev/null +++ b/Makefile.local @@ -0,0 +1,2 @@ +FLAG=-v +NOSEFLAGS=-v -s diff --git a/PKG-INFO b/PKG-INFO index e64ece76688e735e99bfc5f05278259220baf817..1caa4b57998c525be0d28b1da197960e4df8c9ff 100644 --- a/PKG-INFO +++ b/PKG-INFO @@ -1,6 +1,6 @@ Metadata-Version: 2.1 Name: swh.model -Version: 0.6.1 +Version: 0.6.4 Summary: Software Heritage data model Home-page: https://forge.softwareheritage.org/diffusion/DMOD/ Author: Software Heritage developers diff --git a/bin/git-revhash b/bin/git-revhash new file mode 100755 index 0000000000000000000000000000000000000000..69d1d1cdb63d6d7dcfe07ef1b0176faebe251e3a --- /dev/null +++ b/bin/git-revhash @@ -0,0 +1,7 @@ +#!/usr/bin/env bash + +# Use +# git-revhash 'tree 4b825dc642cb6eb9a060e54bf8d69288fbee4904\nparent 22c0fa5195a53f2e733ec75a9b6e9d1624a8b771\nauthor seanius <seanius@3187e211-bb14-4c82-9596-0b59d67cd7f4> 1138341044 +0000\ncommitter seanius <seanius@3187e211-bb14-4c82-9596-0b59d67cd7f4> 1138341044 +0000\n\nmaking dir structure...\n' # noqa +# output: 17a631d474f49bbebfdf3d885dcde470d7faafd7 + +echo -ne $* | git hash-object --stdin -t commit diff --git a/bin/swh-hashtree b/bin/swh-hashtree new file mode 100755 index 0000000000000000000000000000000000000000..5b85b7b5e73d24afc9d4e53b0a275327c2586925 --- /dev/null +++ b/bin/swh-hashtree @@ -0,0 +1,56 @@ +#!/usr/bin/env python3 + +# Use sample: +# swh-hashtree --path . --ignore '.svn' --ignore '.git-svn' \ +# --ignore-empty-folders +# 38f8d2c3a951f6b94007896d0981077e48bbd702 + +import click +import os + +from swh.model import from_disk, hashutil + + +def combine_filters(*filters): + """Combine several ignore filters""" + if len(filters) == 0: + return from_disk.accept_all_directories + elif len(filters) == 1: + return filters[0] + + def combined_filter(*args, **kwargs): + return all(filter(*args, **kwargs) for filter in filters) + + return combined_filter + + +@click.command() +@click.option("--path", default=".", help="Optional path to hash.") +@click.option( + "--ignore-empty-folder", is_flag=True, default=False, help="Ignore empty folder." +) +@click.option("--ignore", multiple=True, help="Ignore pattern.") +def main(path, ignore_empty_folder=False, ignore=None): + + filters = [] + if ignore_empty_folder: + filters.append(from_disk.ignore_empty_directories) + if ignore: + filters.append( + from_disk.ignore_named_directories([os.fsencode(name) for name in ignore]) + ) + + try: + d = from_disk.Directory.from_disk( + path=os.fsencode(path), dir_filter=combine_filters(*filters) + ) + hash = d.hash + except Exception as e: + print(e) + return + else: + print(hashutil.hash_to_hex(hash)) + + +if __name__ == "__main__": + main() diff --git a/bin/swh-revhash b/bin/swh-revhash new file mode 100755 index 0000000000000000000000000000000000000000..d3a8caf84fab120f7721bffd4d269ee77626982e --- /dev/null +++ b/bin/swh-revhash @@ -0,0 +1,31 @@ +#!/usr/bin/env python3 + +# Use: +# swh-revhash 'tree 4b825dc642cb6eb9a060e54bf8d69288fbee4904\nparent 22c0fa5195a53f2e733ec75a9b6e9d1624a8b771\nauthor seanius <seanius@3187e211-bb14-4c82-9596-0b59d67cd7f4> 1138341044 +0000\ncommitter seanius <seanius@3187e211-bb14-4c82-9596-0b59d67cd7f4> 1138341044 +0000\n\nmaking dir structure...\n' # noqa +# output: 17a631d474f49bbebfdf3d885dcde470d7faafd7 + +# To compare with git: +# git-revhash 'tree 4b825dc642cb6eb9a060e54bf8d69288fbee4904\nparent 22c0fa5195a53f2e733ec75a9b6e9d1624a8b771\nauthor seanius <seanius@3187e211-bb14-4c82-9596-0b59d67cd7f4> 1138341044 +0000\ncommitter seanius <seanius@3187e211-bb14-4c82-9596-0b59d67cd7f4> 1138341044 +0000\n\nmaking dir structure...\n' # noqa +# output: 17a631d474f49bbebfdf3d885dcde470d7faafd7 + + +import sys + +from swh.model import identifiers, hashutil + + +def revhash(revision_raw): + """Compute the revision hash. + + """ + # HACK: string have somehow their \n expanded to \\n + if b"\\n" in revision_raw: + revision_raw = revision_raw.replace(b"\\n", b"\n") + + h = hashutil.hash_git_data(revision_raw, "commit") + return identifiers.identifier_to_str(h) + + +if __name__ == "__main__": + revision_raw = sys.argv[1].encode("utf-8") + print(revhash(revision_raw)) diff --git a/docs/.gitignore b/docs/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..58a761ead8c3be489f0e4738fac8d2173656ea7f --- /dev/null +++ b/docs/.gitignore @@ -0,0 +1,3 @@ +_build/ +apidoc/ +*-stamp diff --git a/docs/Makefile b/docs/Makefile new file mode 100644 index 0000000000000000000000000000000000000000..b97c7532e5b946df72b8641f22f6e3e2ba84602c --- /dev/null +++ b/docs/Makefile @@ -0,0 +1,2 @@ +include ../../swh-docs/Makefile.sphinx +-include Makefile.local diff --git a/docs/Makefile.local b/docs/Makefile.local new file mode 100644 index 0000000000000000000000000000000000000000..fbd18f25c39c2079906b2f347b56eb3cda797e0f --- /dev/null +++ b/docs/Makefile.local @@ -0,0 +1,15 @@ +sphinx/html: images +sphinx/clean: clean-images +assets: images + +images: + make -C images/ +clean-images: + make -C images/ clean + +.PHONY: images clean-images + + +# Local Variables: +# mode: makefile +# End: diff --git a/docs/_static/.placeholder b/docs/_static/.placeholder new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/docs/_templates/.placeholder b/docs/_templates/.placeholder new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/docs/cli.rst b/docs/cli.rst new file mode 100644 index 0000000000000000000000000000000000000000..654111f660fdde7ad129b2658cbeed8633dfe796 --- /dev/null +++ b/docs/cli.rst @@ -0,0 +1,6 @@ +Command-line interface +====================== + +.. click:: swh.model.cli:identify + :prog: swh identify + :show-nested: diff --git a/docs/conf.py b/docs/conf.py new file mode 100644 index 0000000000000000000000000000000000000000..190deb7e5e29a032ce73bb31f168fe12df300d0d --- /dev/null +++ b/docs/conf.py @@ -0,0 +1 @@ +from swh.docs.sphinx.conf import * # NoQA diff --git a/docs/data-model.rst b/docs/data-model.rst new file mode 100644 index 0000000000000000000000000000000000000000..2e311619f52d1d50e9bc0fbdeec89e637db8442d --- /dev/null +++ b/docs/data-model.rst @@ -0,0 +1,262 @@ +.. _data-model: + +Data model +========== + +.. note:: The text below is adapted from §7 of the article `Software Heritage: + Why and How to Preserve Software Source Code + <https://hal.archives-ouvertes.fr/hal-01590958/>`_ (in proceedings of `iPRES + 2017 <https://ipres2017.jp/>`_, 14th International Conference on Digital + Preservation, by Roberto Di Cosmo and Stefano Zacchiroli), which also + provides a more general description of Software Heritage for the digital + preservation research community. + +In any archival project the choice of the underlying data model—at the logical +level, independently from how data is actually stored on physical media—is +paramount. The data model adopted by Software Heritage to represent the +information that it collects is centered around the notion of *software +artifact*, described below. + +It is important to notice that according to our principles, we must store with +every software artifact full information on where it has been found +(provenance), that is also captured in our data model, so we start by providing +some basic information on the nature of this provenance information. + + +Source code hosting places +-------------------------- + +Currently, Software Heritage uses of a curated list of source code hosting +places to crawl. The most common entries we expect to place in such a list are +popular collaborative development forges (e.g., GitHub, Bitbucket), package +manager repositories that host source package (e.g., CPAN, npm), and FOSS +distributions (e.g., Fedora, FreeBSD). But we may of course allow also more +niche entries, such as URLs of personal or institutional project collections +not hosted on major forges. + +While currently entirely manual, the curation of such a list might easily be +semi-automatic, with entries suggested by fellow archivists and/or concerned +users that want to notify Software Heritage of the need of archiving specific +pieces of endangered source code. This approach is entirely compatible with +Web-wide crawling approaches: crawlers capable of detecting the presence of +source code might enrich the list. In both cases the list will remain curated, +with (semi-automated) review processes that will need to pass before a hosting +place starts to be used. + + +Software artifacts +------------------ + +Once the hosting places are known, they will need to be periodically looked at +in order to add to the archive missing software artifacts. Which software +artifacts will be found there? + +In general, each software distribution mechanism hosts multiple releases of a +given software at any given time. For VCS (Version Control Systems), this is +the natural behaviour; for software packages, while a single version of a +package is just a snapshot of the corresponding software product, one can often +retrieve both current and past versions of the package from its distribution +site. + +By reviewing and generalizing existing VCS and source package formats, we have +identified the following recurrent artifacts as commonly found at source code +hosting places. They form the basic ingredients of the Software Heritage +archive. As the terminology varies quite a bit from technology to technology, +we provide below both the canonical name used in Software Heritage and popular +synonyms. + +**contents** (AKA "blobs") + the raw content of (source code) files as a sequence of bytes, without file + names or any other metadata. File contents are often recurrent, e.g., across + different versions of the same software, different directories of the same + project, or different projects all together. + +**directories** + a list of named directory entries, each of which pointing to other artifacts, + usually file contents or sub-directories. Directory entries are also + associated to arbitrary metadata, which vary with technologies, but usually + includes permission bits, modification timestamps, etc. + +**revisions** (AKA "commits") + software development within a specific project is essentially a time-indexed + series of copies of a single "root" directory that contains the entire + project source code. Software evolves when a developer modifies the content + of one or more files in that directory and record their changes. + + Each recorded copy of the root directory is known as a "revision". It points + to a fully-determined directory and is equipped with arbitrary metadata. Some + of those are added manually by the developer (e.g., commit message), others + are automatically synthesized (timestamps, preceding commit(s), etc). + +**releases** (AKA "tags") + some revisions are more equals than others and get selected by developers as + denoting important project milestones known as "releases". Each release + points to the last commit in project history corresponding to the release and + might carry arbitrary metadata—e.g., release name and version, release + message, cryptographic signatures, etc. + + +Additionally, the following crawling-related information are stored as +provenance information in the Software Heritage archive: + +**origins** + code "hosting places" as previously described are usually large platforms + that host several unrelated software projects. For software provenance + purposes it is important to be more specific than that. + + Software origins are fine grained references to where source code artifacts + archived by Software Heritage have been retrieved from. They take the form of + ``(type, url)`` pairs, where ``url`` is a canonical URL (e.g., the address at + which one can ``git clone`` a repository or download a source tarball) and + ``type`` the kind of software origin (e.g., git, svn, or dsc for Debian + source packages). + +.. + **projects** + as commonly intended are more abstract entities that precise software + origins. Projects relate together several development resources, including + websites, issue trackers, mailing lists, as well as software origins as + intended by Software Heritage. + + The debate around the most apt ontologies to capture project-related + information for software hasn't settled yet, but the place projects will take + in the Software Heritage archive is fairly clear. Projects are abstract + entities, which will be arbitrarily nestable in a versioned + project/sub-project hierarchy, and that can be associated to arbitrary + metadata as well as origins where their source code can be found. + +**snapshots** + any kind of software origin offers multiple pointers to the "current" state + of a development project. In the case of VCS this is reflected by branches + (e.g., master, development, but also so called feature branches dedicated to + extending the software in a specific direction); in the case of package + distributions by notions such as suites that correspond to different maturity + levels of individual packages (e.g., stable, development, etc.). + + A "snapshot" of a given software origin records all entry points found there + and where each of them was pointing at the time. For example, a snapshot + object might track the commit where the master branch was pointing to at any + given time, as well as the most recent release of a given package in the + stable suite of a FOSS distribution. + +**visits** + links together software origins with snapshots. Every time an origin is + consulted a new visit object is created, recording when (according to + Software Heritage clock) the visit happened and the full snapshot of the + state of the software origin at the time. + +.. note:: + This model currently records visits as a single point in time. However, the + actual visit process is not instantaneous. Loaders can record successive + changes to the state of the visit, as their work progresses, as updates to + the visit object. + +Data structure +-------------- + +.. _swh-merkle-dag: +.. figure:: images/swh-merkle-dag.svg + :width: 1024px + :align: center + + Software Heritage archive as a Merkle DAG, augmented with crawling + information (click to zoom). + + +With all the bits of what we want to archive in place, the next question is how +to organize them, i.e., which logical data structure to adopt for their +storage. A key observation for this decision is that source code artifacts are +massively duplicated. This is so for several reasons: + +* code hosting diaspora (i.e., project development moving to the most + recent/cool collaborative development technology over time); +* copy/paste (AKA "vendoring") of parts or entire external FOSS software + components into other software products; +* large overlap between revisions of the same project: usually only a very + small amount of files/directories are modified by a single commit; +* emergence of DVCS (distributed version control systems), which natively work + by replicating entire repository copies around. GitHub-style pull requests + are the pinnacle of this, as they result in creating an additional repository + copy at each change done by a new developer; +* migration from one VCS to another—e.g., migrations from Subversion to Git, + which are really popular these days—resulting in additional copies, but in a + different distribution format, of the very same development histories. + +These trends seem to be neither stopping nor slowing down, and it is reasonable +to expect that they will be even more prominent in the future, due to the +decreasing costs of storage and bandwidth. + +For this reason we argue that any sustainable storage layout for archiving +source code in the very long term should support deduplication, allowing to pay +for the cost of storing source code artifacts that are encountered more than +once only once. For storage efficiency, deduplication should be supported for +all the software artifacts we have discussed, namely: file contents, +directories, revisions, releases, snapshots. + +Realizing that principle, the Software Heritage archive is conceptually a +single (big) `Merkle Direct Acyclic Graph (DAG) +<https://en.wikipedia.org/wiki/Merkle_tree>`_, as depicted in Figure +:ref:`Software Heritage Merkle DAG <swh-merkle-dag>`. In such a graph each of +the artifacts we have described—from file contents up to entire +snapshots—correspond to a node. Edges between nodes emerge naturally: +directory entries point to other directories or file contents; revisions point +to directories and previous revisions, releases point to revisions, snapshots +point to revisions and releases. Additionally, each node contains all metadata +that are specific to the node itself rather than to pointed nodes; e.g., commit +messages, timestamps, or file names. Note that the structure is really a DAG, +and not a tree, due to the fact that the line of revisions nodes might be +forked and merged back. + +.. + directory: fff3cc22cb40f71d26f736c082326e77de0b7692 + parent: e4feb05112588741b4764739d6da756c357e1f37 + author: Stefano Zacchiroli <zack@upsilon.cc> + date: 1443617461 +0200 + committer: Stefano Zacchiroli <zack@upsilon.cc> + commiter_date: 1443617461 +0200 + message: + objstorage: fix tempfile race when adding objects + + Before this change, two workers adding the same + object will end up racing to write <SHA1>.tmp. + [...] + + revisionid: 64a783216c1ec69dcb267449c0bbf5e54f7c4d6d + A revision node in the Software Heritage DAG + +In a Merkle structure each node is identified by an intrinsic identifier +computed as a cryptographic hash of the node content. In the case of Software +Heritage identifiers are computed taking into account both node-specific +metadata and the identifiers of child nodes. + +Consider the revision node in the picture whose identifier starts with +`c7640e08d..`. it points to a directory (identifier starting with +`45f0c078..`), which has also been archived. That directory contains a full +copy, at a specific point in time, of a software component—in the example the +`Hello World <https://forge.softwareheritage.org/source/helloworld/>`_ software +component available on our forge. The revision node also points to the +preceding revision node (`43ef7dcd..`) in the project development history. +Finally, the node contains revision-specific metadata, such as the author and +committer of the given change, its timestamps, and the message entered by the +author at commit time. + +The identifier of the revision node itself (`c7640e08d..`) is computed as a +cryptographic hash of a (canonical representation of) all the information shown +in figure. A change in any of them—metadata and/or pointed nodes—would result +in an entirely different node identifier. All other types of nodes in the +Software Heritage archive behave similarly. + +The Software Heritage archive inherits useful properties from the underlying +Merkle structure. In particular, deduplication is built-in. Any software +artifacts encountered in the wild gets added to the archive only if a +corresponding node with a matching intrinsic identifier is not already +available in the graph—file content, commits, entire directories or project +snapshots are all deduplicated incurring storage costs only once. + +Furthermore, as a side effect of this data model choice, the entire development +history of all the source code archived in Software Heritage—which ambitions to +match all published source code in the world—is available as a unified whole, +making emergent structures such as code reuse across different projects or +software origins, readily available. Further reinforcing the Software Heritage +use cases, this object could become a veritable "map of the stars" of our +entire software commons. diff --git a/docs/iana-swh-template.txt b/docs/iana-swh-template.txt new file mode 100644 index 0000000000000000000000000000000000000000..a79cf955d0835c8de2eaf3aa066a7d14c73b8fbe --- /dev/null +++ b/docs/iana-swh-template.txt @@ -0,0 +1,39 @@ +(last updated 2020-04-28) + +Scheme name: swh + +Status: Provisional + +Applications/protocols that use this scheme name: + Software Heritage: https://www.softwareheritage.org/ + Software Package Data Exchange: https://spdx.org/ + NTIA: https://www.ntia.doc.gov/SoftwareTransparency + Identifiers.org: http://identifiers.org/ + Name-to-Thing (N2T): https://n2t.net/ + HAL: https://hal.archives-ouvertes.fr/ + +Contact: Stefano Zacchiroli <zack@upsilon.cc> + +Change controller: Software Heritage <info@softwareheritage.org> + +References: + + Scheme specification: https://docs.softwareheritage.org/devel/swh-model/persistent-identifiers.html + + The Software Heritage project: https://www.softwareheritage.org/ + + The Software Heritage archive: https://archive.softwareheritage.org/ + + Publications: + + Roberto Di Cosmo, Morane Gruenpeter, Stefano Zacchiroli. Referencing Source + Code Artifacts: a Separate Concern in Software Citation. In Computing in + Science and Engineering, volume 22, issue 2, pp. 33-43. ISSN 1521-9615, + IEEE. March 2020. DOI 10.1109/MCSE.2019.2963148 + + Roberto Di Cosmo, Morane Gruenpeter, Stefano Zacchiroli. Identifiers for + Digital Objects: the Case of Software Source Code Preservation. In + proceedings of iPRES 2018: 15th International Conference on Digital + Preservation. September 2018. 10.17605/OSF.IO/KDE56 + +(file created 2020-04-28) diff --git a/docs/images/.gitignore b/docs/images/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e9c694ce24364021872ec307b95ca435d82b0aff --- /dev/null +++ b/docs/images/.gitignore @@ -0,0 +1,2 @@ +swh-merkle-dag.pdf +swh-merkle-dag.svg diff --git a/docs/images/Makefile b/docs/images/Makefile new file mode 100644 index 0000000000000000000000000000000000000000..890d6fb994b49f5b0dfcbcc4387b20d2ee194445 --- /dev/null +++ b/docs/images/Makefile @@ -0,0 +1,20 @@ + +MERKLE_DAG = swh-merkle-dag.pdf swh-merkle-dag.svg + +BUILD_TARGETS = +BUILD_TARGETS += $(MERKLE_DAG) + +all: $(BUILD_TARGETS) + +%.svg: %.dia + dia -e $@ $< + +%.pdf: %.svg + set -e; if [ $$(inkscape --version 2>/dev/null | grep -Eo '[0-9]+' | head -1) -gt 0 ]; then \ + inkscape -o $@ $< ; \ + else \ + inkscape -A $@ $< ; \ + fi + +clean: + -rm -f $(BUILD_TARGETS) diff --git a/docs/images/swh-merkle-dag.dia b/docs/images/swh-merkle-dag.dia new file mode 100644 index 0000000000000000000000000000000000000000..00edd643bf62df4f65766dcfaaf96be5611ea25b Binary files /dev/null and b/docs/images/swh-merkle-dag.dia differ diff --git a/docs/index.rst b/docs/index.rst new file mode 100644 index 0000000000000000000000000000000000000000..8ad09ac003e8efc69d4682cb57a1e531cffcd3c9 --- /dev/null +++ b/docs/index.rst @@ -0,0 +1,15 @@ +.. _swh-model: + +Software Heritage - Data model +============================== + +Implementation of the :ref:`data-model` to archive source code artifacts. + +.. toctree:: + :caption: Overview: + :titlesonly: + + data-model + persistent-identifiers + cli + /apidoc/swh.model diff --git a/docs/persistent-identifiers.rst b/docs/persistent-identifiers.rst new file mode 100644 index 0000000000000000000000000000000000000000..ea1781dd3cf1745d798811f7a10d958f74aa40cc --- /dev/null +++ b/docs/persistent-identifiers.rst @@ -0,0 +1,386 @@ +.. _persistent-identifiers: + +================================================= +SoftWare Heritage persistent IDentifiers (SWHIDs) +================================================= + +**version 1.5, last modified 2020-05-14** + +.. contents:: + :local: + :depth: 2 + + +Overview +======== + +You can point to objects present in the `Software Heritage +<https://www.softwareheritage.org/>`_ `archive +<https://archive.softwareheritage.org/>`_ by the means of **SoftWare Heritage +persistent IDentifiers**, or **SWHIDs** for short, that are guaranteed to +remain stable (persistent) over time. Their syntax, meaning, and usage is +described below. Note that they are identifiers and not URLs, even though +URL-based `resolvers`_ for SWHIDs are also available. + +A SWHID consists of two separate parts, a mandatory *core identifier* that can +point to any software artifact (or "object") available in the Software Heritage +archive, and an optional list of *qualifiers* that allows to specify the +context where the object is meant to be seen and point to a subpart of the +object itself. + +Objects come in different types: + +* contents +* directories +* revisions +* releases +* snapshots + +Each object is identified by an intrinsic, type-specific object identifier that +is embedded in its SWHID as described below. The intrinsic identifiers embedded +in SWHIDs are strong cryptographic hashes computed on the entire set of object +properties. Together, these identifiers form a `Merkle structure +<https://en.wikipedia.org/wiki/Merkle_tree>`_, specifically a Merkle `DAG +<https://en.wikipedia.org/wiki/Directed_acyclic_graph>`_. + +See the :ref:`Software Heritage data model <data-model>` for an overview of +object types and how they are linked together. See +:py:mod:`swh.model.identifiers` for details on how the intrinsic identifiers +embedded in SWHIDs are computed. + +The optional qualifiers are of two kinds: + +* **context qualifiers:** carry information about the context where a given + object is meant to be seen. This is particularly important, as the same + object can be reached in the Merkle graph following different *paths* + starting from different nodes (or *anchors*), and it may have been retrieved + from different *origins*, that may evolve between different *visits* +* **fragment qualifiers:** allow to pinpoint specific subparts of an object + + +Syntax +====== + +Syntactically, SWHIDs are generated by the ``<identifier>`` entry point in the +following grammar: + +.. code-block:: bnf + + <identifier> ::= <identifier_core> [ <qualifiers> ] ; + + <identifier_core> ::= "swh" ":" <scheme_version> ":" <object_type> ":" <object_id> ; + <scheme_version> ::= "1" ; + <object_type> ::= + "snp" (* snapshot *) + | "rel" (* release *) + | "rev" (* revision *) + | "dir" (* directory *) + | "cnt" (* content *) + ; + <object_id> ::= 40 * <hex_digit> ; (* intrinsic object id, as hex-encoded SHA1 *) + <dec_digit> ::= "0" | "1" | "2" | "3" | "4" | "5" | "6" | "7" | "8" | "9" ; + <hex_digit> ::= <dec_digit> | "a" | "b" | "c" | "d" | "e" | "f" ; + + <qualifiers> := ";" <qualifier> [ <qualifiers> ] ; + <qualifier> ::= + <context_qualifier> + | <fragment_qualifier> + ; + <context_qualifier> ::= + <origin_ctxt> + | <visit_ctxt> + | <anchor_ctxt> + | <path_ctxt> + ; + <origin_ctxt> ::= "origin" "=" <url_escaped> ; + <visit_ctxt> ::= "visit" "=" <identifier_core> ; + <anchor_ctxt> ::= "anchor" "=" <identifier_core> ; + <path_ctxt> ::= "path" "=" <path_absolute_escaped> ; + <fragment_qualifier> ::= "lines" "=" <line_number> ["-" <line_number>] ; + <line_number> ::= <dec_digit> + ; + <url_escaped> ::= (* RFC 3987 IRI *) + <path_absolute_escaped> ::= (* RFC 3987 absolute path *) + +Where: + +- ``<path_absolute_escaped>`` is an ``<ipath-absolute>`` from `RFC 3987`_, and +- ``<url_escaped>`` is a `RFC 3987`_ IRI + +in either case all occurrences of ``;`` (and ``%``, as required by the RFC) +have been percent-encoded (as ``%3B`` and ``%25`` respectively). Other +characters *can* be percent-encoded, e.g., to improve readability and/or +embeddability of SWHID in other contexts. + +.. _RFC 3987: https://tools.ietf.org/html/rfc3987 + + +Semantics +========= + + +Core identifiers +---------------- + +``:`` is used as separator between the logical parts of core identifiers. The +``swh`` prefix makes explicit that these identifiers are related to *SoftWare +Heritage*. ``1`` (``<scheme_version>``) is the current version of this +identifier *scheme*. Future editions will use higher version numbers, possibly +breaking backward compatibility, but without breaking the resolvability of +SWHIDs that conform to previous versions of the scheme. + +A SWHID points to a single object, whose type is explicitly captured by +``<object_type>``: + +* ``snp`` to **snapshots**, +* ``rel`` to **releases**, +* ``rev`` to **revisions**, +* ``dir`` to **directories**, +* ``cnt`` to **contents**. + +The actual object pointed to is identified by the intrinsic identifier +``<object_id>``, which is a hex-encoded (using lowercase ASCII characters) SHA1 +computed on the content and metadata of the object itself, as follows: + +* for **snapshots**, intrinsic identifiers are computed as per + :py:func:`swh.model.identifiers.snapshot_identifier` + +* for **releases**, as per + :py:func:`swh.model.identifiers.release_identifier` + that produces the same result as a git release hash + +* for **revisions**, as per + :py:func:`swh.model.identifiers.revision_identifier` + that produces the same result as a git commit hash + +* for **directories**, per + :py:func:`swh.model.identifiers.directory_identifier` + that produces the same result as a git tree hash + +* for **contents**, the intrinsic identifier is the ``sha1_git`` hash returned by + :py:func:`swh.model.identifiers.content_identifier`, i.e., the SHA1 of a byte + sequence obtained by juxtaposing the ASCII string ``"blob"`` (without + quotes), a space, the length of the content as decimal digits, a NULL byte, + and the actual content of the file. + + +Qualifiers +---------- + +``;`` is used as separator between the core identifier and the optional +qualifiers, as well as between qualifiers. Each qualifier is specified as a +key/value pair, using ``=`` as a separator. + +The following *context qualifiers* are available: + +* **origin:** the *software origin* where an object has been found or observed + in the wild, as an URI; + +* **visit:** the core identifier of a *snapshot* corresponding to a specific + *visit* of a repository containing the designated object; + +* **anchor:** a *designated node* in the Merkle DAG relative to which a *path + to the object* is specified, as the core identifier of a directory, a + revision, a release or a snapshot; + +* **path:** the *absolute file path*, from the *root directory* associated to + the *anchor node*, to the object; when the anchor denotes a directory or a + revision, and almost always when it's a release, the root directory is + uniquely determined; when the anchor denotes a snapshot, the root directory + is the one pointed to by ``HEAD`` (possibly indirectly), and undefined if + such a reference is missing; + +The following *fragment qualifier* is available: + +* **lines:** *line number(s)* of interest, usually within a content object + +We recommend to equip identifiers meant to be shared with as many qualifiers as +possible. While qualifiers may be listed in any order, it is good practice to +present them in the order given above, i.e., ``origin``, ``visit``, ``anchor``, +``path``, ``lines``. Redundant information should be omitted: for example, if +the *visit* is present, and the *path* is relative to the snapshot indicated +there, then the *anchor* qualifier is superfluous; similarly, if the *path* is +empty, it may be omitted. + + +Interoperability +================ + + +URI scheme +---------- + +The ``swh`` URI scheme is registered at IANA for SWHIDs. The present documents +constitutes the scheme specification for such URI scheme. + + +Git compatibility +----------------- + +SWHIDs for contents, directories, revisions, and releases are, at present, +compatible with the `Git <https://git-scm.com/>`_ way of `computing identifiers +<https://git-scm.com/book/en/v2/Git-Internals-Git-Objects>`_ for its objects. +The ``<object_id>`` part of a SWHID for a content object is the Git blob +identifier of any file with the same content; for a revision it is the Git +commit identifier for the same revision, etc. This is not the case for +snapshot identifiers, as Git does not have a corresponding object type. + +Note that Git compatibility is incidental and is not guaranteed to be +maintained in future versions of this scheme (or Git). + + +Examples +======== + + +Core identifiers +---------------- + +* ``swh:1:cnt:94a9ed024d3859793618152ea559a168bbcbb5e2`` points to the content + of a file containing the full text of the GPL3 license + +* ``swh:1:dir:d198bc9d7a6bcf6db04f476d29314f157507d505`` points to a directory + containing the source code of the Darktable photography application as it was + at some point on 4 May 2017 + +* ``swh:1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d`` points to a commit in + the development history of Darktable, dated 16 January 2017, that added + undo/redo supports for masks + +* ``swh:1:rel:22ece559cc7cc2364edc5e5593d63ae8bd229f9f`` points to Darktable + release 2.3.0, dated 24 December 2016 + +* ``swh:1:snp:c7c108084bc0bf3d81436bf980b46e98bd338453`` points to a snapshot + of the entire Darktable Git repository taken on 4 May 2017 from GitHub + + +Identifiers with qualifiers +--------------------------- + +* The following `SWHID + <https://archive.softwareheritage.org/swh:1:cnt:4d99d2d18326621ccdd70f5ea66c2e2ac236ad8b;origin=https://gitorious.org/ocamlp3l/ocamlp3l_cvs.git;visit=swh:1:snp:d7f1b9eb7ccb596c2622c4780febaa02549830f9;anchor=swh:1:rev:2db189928c94d62a3b4757b3eec68f0a4d4113f0;path=/Examples/SimpleFarm/simplefarm.ml;lines=9-15>`_ + denotes the lines 9 to 15 of a file content that can be found at absolute + path ``/Examples/SimpleFarm/simplefarm.ml`` from the root directory of the + revision ``swh:1:rev:2db189928c94d62a3b4757b3eec68f0a4d4113f0`` that is + contained in the snapshot + ``swh:1:snp:d7f1b9eb7ccb596c2622c4780febaa02549830f9`` taken from the origin + ``https://gitorious.org/ocamlp3l/ocamlp3l_cvs.git``: + +.. code-block:: url + + swh:1:cnt:4d99d2d18326621ccdd70f5ea66c2e2ac236ad8b; + origin=https://gitorious.org/ocamlp3l/ocamlp3l_cvs.git; + visit=swh:1:snp:d7f1b9eb7ccb596c2622c4780febaa02549830f9; + anchor=swh:1:rev:2db189928c94d62a3b4757b3eec68f0a4d4113f0; + path=/Examples/SimpleFarm/simplefarm.ml; + lines=9-15 + +* Here is an example of a `SWHID + <https://archive.softwareheritage.org/swh:1:cnt:f10371aa7b8ccabca8479196d6cd640676fd4a04;origin=https://github.com/web-platform-tests/wpt;visit=swh:1:snp:b37d435721bbd450624165f334724e3585346499;anchor=swh:1:rev:259d0612af038d14f2cd889a14a3adb6c9e96d96;path=/html/semantics/document-metadata/the-meta-element/pragma-directives/attr-meta-http-equiv-refresh/support/x%3Burl=foo/>`_ + with a file path that requires percent-escaping: + +.. code-block:: url + + swh:1:cnt:f10371aa7b8ccabca8479196d6cd640676fd4a04; + origin=https://github.com/web-platform-tests/wpt; + visit=swh:1:snp:b37d435721bbd450624165f334724e3585346499; + anchor=swh:1:rev:259d0612af038d14f2cd889a14a3adb6c9e96d96; + path=/html/semantics/document-metadata/the-meta-element/pragma-directives/attr-meta-http-equiv-refresh/support/x%3Burl=foo/ + + +Implementation +============== + + +Computing +--------- + +An important property of any SWHID is that its core identifier is *intrinsic*: +it can be *computed from the object itself*, without having to rely on any +third party. An implementation of SWHID that allows to do so locally is the +`swh identify <https://docs.softwareheritage.org/devel/swh-model/cli.html>`_ +tool, available from the `swh.model <https://pypi.org/project/swh.model/>`_ +Python package under the GPL license. + +SWHIDs are also automatically computed by Software Heritage for all archived +objects as part of its archival activity, and can be looked up via the project +`Web interface <https://archive.softwareheritage.org>`_. + +This has various practical implications: + +* when a software artifact is obtained from Software Heritage by resolving a + SWHID, it is straightforward to verify that it is exactly the intended one: + just compute the core identifier from the artefact itself, and check that it + is the same as the core identifier part of the SHWID + +* the core identifier of a software artifact can be computed *before* its + archival on Software Heritage + + +Resolvers +--------- + + +Software Heritage resolver +~~~~~~~~~~~~~~~~~~~~~~~~~~ + +SWHIDs can be resolved using the Software Heritage `Web interface +<https://archive.softwareheritage.org>`_. In particular, the **root endpoint** +``/`` can be given a SWHID and will lead to the browsing page of the +corresponding object, like this: +``https://archive.softwareheritage.org/<identifier>``. + +A **dedicated** ``/resolve`` **endpoint** of the Software Heritage `Web API +<https://archive.softwareheritage.org/api/>`_ is also available to +programmatically resolve SWHIDs; see: :http:get:`/api/1/resolve/(swhid)/`. + +Examples: + +* `<https://archive.softwareheritage.org/swh:1:cnt:94a9ed024d3859793618152ea559a168bbcbb5e2>`_ +* `<https://archive.softwareheritage.org/swh:1:dir:d198bc9d7a6bcf6db04f476d29314f157507d505>`_ +* `<https://archive.softwareheritage.org/api/1/resolve/swh:1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d>`_ +* `<https://archive.softwareheritage.org/api/1/resolve/swh:1:rel:22ece559cc7cc2364edc5e5593d63ae8bd229f9f>`_ +* `<https://archive.softwareheritage.org/api/1/resolve/swh:1:snp:c7c108084bc0bf3d81436bf980b46e98bd338453>`_ +* `<https://archive.softwareheritage.org/swh:1:cnt:4d99d2d18326621ccdd70f5ea66c2e2ac236ad8b;origin=https://gitorious.org/ocamlp3l/ocamlp3l_cvs.git;visit=swh:1:snp:d7f1b9eb7ccb596c2622c4780febaa02549830f9;anchor=swh:1:rev:2db189928c94d62a3b4757b3eec68f0a4d4113f0;path=/Examples/SimpleFarm/simplefarm.ml;lines=9-15>`_ +* `<https://archive.softwareheritage.org/swh:1:cnt:f10371aa7b8ccabca8479196d6cd640676fd4a04;origin=https://github.com/web-platform-tests/wpt;visit=swh:1:snp:b37d435721bbd450624165f334724e3585346499;anchor=swh:1:rev:259d0612af038d14f2cd889a14a3adb6c9e96d96;path=/html/semantics/document-metadata/the-meta-element/pragma-directives/attr-meta-http-equiv-refresh/support/x%3Burl=foo/>`_ + + +Third-party resolvers +~~~~~~~~~~~~~~~~~~~~~ + +The following **third party resolvers** support SWHID resolution: + +* `Identifiers.org <https://identifiers.org>`_; see: + `<http://identifiers.org/swh/>`_ (registry identifier `MIR:00000655 + <https://www.ebi.ac.uk/miriam/main/datatypes/MIR:00000655>`_). + +* `Name-to-Thing (N2T) <https://n2t.net/>`_ + +Note that resolution via Identifiers.org currently only supports *core +identifiers* due to `syntactic incompatibilities with qualifiers +<http://identifiers.org/documentation#custom_requests>`_. + +Examples: + +* `<https://identifiers.org/swh:1:cnt:94a9ed024d3859793618152ea559a168bbcbb5e2>`_ +* `<https://identifiers.org/swh:1:dir:d198bc9d7a6bcf6db04f476d29314f157507d505>`_ +* `<https://identifiers.org/swh:1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d>`_ +* `<https://n2t.net/swh:1:rel:22ece559cc7cc2364edc5e5593d63ae8bd229f9f>`_ +* `<https://n2t.net/swh:1:snp:c7c108084bc0bf3d81436bf980b46e98bd338453>`_ +* `<https://n2t.net/swh:1:cnt:4d99d2d18326621ccdd70f5ea66c2e2ac236ad8b;origin=https://gitorious.org/ocamlp3l/ocamlp3l_cvs.git;visit=swh:1:snp:d7f1b9eb7ccb596c2622c4780febaa02549830f9;anchor=swh:1:rev:2db189928c94d62a3b4757b3eec68f0a4d4113f0;path=/Examples/SimpleFarm/simplefarm.ml;lines=9-15>`_ +* `<https://n2t.net/swh:1:cnt:f10371aa7b8ccabca8479196d6cd640676fd4a04;origin=https://github.com/web-platform-tests/wpt;visit=swh:1:snp:b37d435721bbd450624165f334724e3585346499;anchor=swh:1:rev:259d0612af038d14f2cd889a14a3adb6c9e96d96;path=/html/semantics/document-metadata/the-meta-element/pragma-directives/attr-meta-http-equiv-refresh/support/x%3Burl=foo/>`_ + + +References +========== + +* Roberto Di Cosmo, Morane Gruenpeter, Stefano Zacchiroli. `Identifiers for + Digital Objects: the Case of Software Source Code Preservation + <https://hal.archives-ouvertes.fr/hal-01865790v4>`_. In Proceedings of `iPRES + 2018 <https://ipres2018.org/>`_: 15th International Conference on Digital + Preservation, Boston, MA, USA, September 2018, 9 pages. + +* Roberto Di Cosmo, Morane Gruenpeter, Stefano Zacchiroli. `Referencing Source + Code Artifacts: a Separate Concern in Software Citation + <https://arxiv.org/abs/2001.08647>`_. In Computing in Science and + Engineering, volume 22, issue 2, pages 33-43. ISSN 1521-9615, + IEEE. March 2020. diff --git a/mypy.ini b/mypy.ini new file mode 100644 index 0000000000000000000000000000000000000000..71ae7f3b03a19ac782e54450a52d27110746658b --- /dev/null +++ b/mypy.ini @@ -0,0 +1,29 @@ +[mypy] +namespace_packages = True +warn_unused_ignores = True + +# 3rd party libraries without stubs (yet) + +[mypy-attrs_strict.*] # a bit sad, but... +ignore_missing_imports = True + +[mypy-deprecated.*] +ignore_missing_imports = True + +[mypy-django.*] # false positive, only used my hypotesis' extras +ignore_missing_imports = True + +[mypy-dulwich.*] +ignore_missing_imports = True + +[mypy-iso8601.*] +ignore_missing_imports = True + +[mypy-pkg_resources.*] +ignore_missing_imports = True + +[mypy-pyblake2.*] +ignore_missing_imports = True + +[mypy-pytest.*] +ignore_missing_imports = True diff --git a/pytest.ini b/pytest.ini new file mode 100644 index 0000000000000000000000000000000000000000..c8e8c197ec42d9116539ae8d5cdedf12a4678a6b --- /dev/null +++ b/pytest.ini @@ -0,0 +1,5 @@ +[pytest] +addopts = --doctest-modules +norecursedirs = docs +markers = + fs: tests that involve filesystem ios diff --git a/requirements.txt b/requirements.txt index a5d782c4eb5084b6a5f9307fa80bdd4c75567e59..255afbed06bc82e9ecd73a18455249217f18374a 100644 --- a/requirements.txt +++ b/requirements.txt @@ -8,4 +8,4 @@ hypothesis iso8601 python-dateutil typing_extensions -vcversioner + diff --git a/setup.py b/setup.py index f2432ac311654135b4c0851fe322f892cd1121d9..ecaac1058cb3dc356fe45ef910d5bed157dbc11b 100755 --- a/setup.py +++ b/setup.py @@ -47,7 +47,8 @@ setup( author_email="swh-devel@inria.fr", url="https://forge.softwareheritage.org/diffusion/DMOD/", packages=find_packages(), - setup_requires=["vcversioner"], + setup_requires=["setuptools-scm"], + use_scm_version=True, install_requires=( parse_requirements() + parse_requirements("swh") + blake2_requirements ), @@ -55,7 +56,6 @@ setup( "cli": parse_requirements("cli"), "testing": parse_requirements("test"), }, - vcversioner={}, include_package_data=True, entry_points=""" [console_scripts] diff --git a/swh.model.egg-info/PKG-INFO b/swh.model.egg-info/PKG-INFO index e64ece76688e735e99bfc5f05278259220baf817..1caa4b57998c525be0d28b1da197960e4df8c9ff 100644 --- a/swh.model.egg-info/PKG-INFO +++ b/swh.model.egg-info/PKG-INFO @@ -1,6 +1,6 @@ Metadata-Version: 2.1 Name: swh.model -Version: 0.6.1 +Version: 0.6.4 Summary: Software Heritage data model Home-page: https://forge.softwareheritage.org/diffusion/DMOD/ Author: Software Heritage developers diff --git a/swh.model.egg-info/SOURCES.txt b/swh.model.egg-info/SOURCES.txt index 763a95cb9133c6375cceb9709b9ae918df62c525..90423a1aae99e120c12d7bd1203d5be5c9303399 100644 --- a/swh.model.egg-info/SOURCES.txt +++ b/swh.model.egg-info/SOURCES.txt @@ -1,13 +1,40 @@ +.gitignore +.pre-commit-config.yaml +AUTHORS +CODE_OF_CONDUCT.md +CONTRIBUTORS +LICENSE MANIFEST.in Makefile +Makefile.local README.md +mypy.ini pyproject.toml +pytest.ini requirements-cli.txt requirements-test.txt requirements.txt setup.cfg setup.py +tox.ini version.txt +bin/git-revhash +bin/swh-hashtree +bin/swh-revhash +docs/.gitignore +docs/Makefile +docs/Makefile.local +docs/cli.rst +docs/conf.py +docs/data-model.rst +docs/iana-swh-template.txt +docs/index.rst +docs/persistent-identifiers.rst +docs/_static/.placeholder +docs/_templates/.placeholder +docs/images/.gitignore +docs/images/Makefile +docs/images/swh-merkle-dag.dia swh/__init__.py swh.model.egg-info/PKG-INFO swh.model.egg-info/SOURCES.txt diff --git a/swh.model.egg-info/requires.txt b/swh.model.egg-info/requires.txt index 499cf97ac0e4d349938d64fafa2b5da63d52b50a..e257baf1120c947eeee8ed54be398131a74f4be9 100644 --- a/swh.model.egg-info/requires.txt +++ b/swh.model.egg-info/requires.txt @@ -5,7 +5,6 @@ hypothesis iso8601 python-dateutil typing_extensions -vcversioner [:python_version < "3.6"] pyblake2 diff --git a/swh/model/model.py b/swh/model/model.py index dd73bf99b6a8f52aca76cee43028f1ebf4e9d424..ff11f1cb2e72cd74dacd6cac54c8b30a131f1595 100644 --- a/swh/model/model.py +++ b/swh/model/model.py @@ -736,8 +736,6 @@ class MetadataAuthority(BaseModel): """Represents an entity that provides metadata about an origin or software artifact.""" - object_type: Final = "metadata_authority" - type = attr.ib(type=MetadataAuthorityType, validator=type_validator()) url = attr.ib(type=str, validator=type_validator()) metadata = attr.ib( @@ -764,8 +762,6 @@ class MetadataFetcher(BaseModel): """Represents a software component used to fetch metadata from a metadata authority, and ingest them into the Software Heritage archive.""" - object_type: Final = "metadata_fetcher" - name = attr.ib(type=str, validator=type_validator()) version = attr.ib(type=str, validator=type_validator()) metadata = attr.ib( @@ -795,8 +791,6 @@ class MetadataTargetType(Enum): @attr.s(frozen=True) class RawExtrinsicMetadata(BaseModel): - object_type: Final = "raw_extrinsic_metadata" - # target object type = attr.ib(type=MetadataTargetType, validator=type_validator()) id = attr.ib(type=Union[str, SWHID], validator=type_validator()) diff --git a/tox.ini b/tox.ini new file mode 100644 index 0000000000000000000000000000000000000000..f0adbaf78eca987fa2f912b951bc2b58a36af673 --- /dev/null +++ b/tox.ini @@ -0,0 +1,34 @@ +[tox] +envlist=black,flake8,mypy,py3 + +[testenv] +extras = + testing +deps = + pytest-cov +commands = + pytest --cov={envsitepackagesdir}/swh/model \ + {envsitepackagesdir}/swh/model \ + --cov-branch {posargs} + +[testenv:black] +skip_install = true +deps = + black +commands = + {envpython} -m black --check swh + +[testenv:flake8] +skip_install = true +deps = + flake8 +commands = + {envpython} -m flake8 + +[testenv:mypy] +extras = + testing +deps = + mypy +commands = + mypy swh